PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009603731.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family CO-like
Protein Properties Length: 408aa    MW: 45044.1 Da    PI: 5.4997
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009603731.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.71.8e-06344439
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                    ++C+ ++e++ + +C+++  +lC +C  + H+       H++
  XP_009603731.1  3 HICEFCGEQRSIVYCRSDAACLCLSCDRNVHSAnalsqrHSR 44
                    68*****************************65677777765 PP

2CCT59.98.5e-21351394144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     R +a+lRYkeK+k RkF+K++rY+sRKa+A+ R RvKGrFvk+ 
  XP_009603731.1 351 RSNAVLRYKEKKKIRKFDKHVRYASRKARADVRRRVKGRFVKAG 394
                     899**************************************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.3E-8147IPR000315B-box-type zinc finger
PROSITE profilePS501199.513147IPR000315B-box-type zinc finger
CDDcd000218.52E-8447No hitNo description
PfamPF062033.0E-15351393IPR010402CCT domain
PROSITE profilePS5101714.852351393IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MGHICEFCGE QRSIVYCRSD AACLCLSCDR NVHSANALSQ RHSRTLLCER CNSQPAVVRR  60
VEEKISLCKN CDSIGHAAGS MHKRQALSCY TGCPSAAELS TIWSFLLDGD STCQKGMGAM  120
SITDNQPRDN EDPQGKYNSQ DMSAAVEMSE LHTSSEKSTT LIESSLPALD NKQNKAELYA  180
GSKNYSSSKG CYSGMKGSTI YEDDPFAQDF NMDEVDLSFE NYEELFSGSL DNPNQFFENE  240
DINGLFGTKD MSVSGSSCQD ADAIEVGSSI RRVMTMQPAC SNAESADSLV SCKTEPSICF  300
ARQASILSFS NLGGESNAGD YQECGASTML LMGEPPWYHP FPETSLPSTS RSNAVLRYKE  360
KKKIRKFDKH VRYASRKARA DVRRRVKGRF VKAGDAYDYD PLNETRSF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009603731.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like isoform X1
RefseqXP_016466833.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like isoform X1
SwissprotQ9SSE51e-126COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLM1A3340.0M1A334_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000136240.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12702468
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.41e-114CONSTANS-like 9